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NCERT Exemplar · Q5

Q.A probe which is a molecule used to locate homologous sequences in a mixture of DNA or RNA molecules could be:

(a) A ssRNA
(b) A ssDNA
(c) Either RNA or DNA
(d) Can be ssDNA but not ssRNA
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A probe can be either single-stranded RNA or single-stranded DNA, as both can hybridize with complementary sequences through base pairing.

In recombinant DNA technology, identifying a specific gene or DNA sequence within a complex mixture is like searching for a single sentence in an entire library. The tool that makes this possible is a molecular probe—a short, labeled nucleic acid sequence designed to find and bind to its complementary match through the principle of base pairing.

The fundamental requirement for a probe is that it must be single-stranded. Why? Because only a single-stranded molecule can form hydrogen bonds with a complementary sequence in the target DNA or RNA. Think of it as a lock-and-key mechanism: the probe carries one half of the code, and when it encounters the matching half in the sample, the two strands zip together through A-T (or A-U in RNA) and G-C pairing. This process is called hybridization.

Now, what can serve as this probe? Both single-stranded DNA (ssDNA) and single-stranded RNA (ssRNA) are perfectly capable of doing the job. The chemistry of base pairing doesn't discriminate between the two—adenine will pair with thymine (or uracil), and guanine will pair with cytosine, regardless of whether the probe is DNA or RNA. In practice, researchers choose between DNA and RNA probes based on convenience, stability, and the specific application. RNA probes, for instance, can be synthesized easily using RNA polymerase, while DNA probes are often more stable and easier to handle. …

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