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Question 76 of 78

Q.(a)

(i) Given below is the schematic representation of the process of electrophoresis. Identify the alphabets representing the : (I) Anode end, and (II) Lightest/Smallest DNA in matrix. [Figure: gel electrophoresis schematic — wells at rows 4, 3, 2, 1 with DNA bands migrating; labelled P, Q, R (arrows at top), U (left, marked 'end'), S (right, marked 'end'), T (arrow at bottom).]
(ii) What is Agarose gel and why is it used in this process ?
(OR)
(b) After performing gel electrophoresis, a student observes that DNA fragments are not visible.
(i) Suggest a reason for this and explain how fragments can be made visible.
(ii) Also explain how a specific DNA fragment can be collected from the gel for further use.
Uttar Pradesh UpmspCBSE Class XII Board 2026Subjective· 2mImportance★★★★★
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Part (a): DNA moves to the anode (here T, the far/bottom end) and the smallest fragment travels farthest (nearest T); agarose is a seaweed polysaccharide forming a porous sieve that separates DNA by size.

Part (b): DNA is colourless, so bands are stained with ethidium bromide and seen as orange under UV; a specific fragment is recovered by cutting out its band and eluting the DNA from the gel.

Gel electrophoresis separates DNA fragments by size. DNA carries a net negative charge (from its phosphate groups), so in an electric field the fragments migrate through the gel towards the positive electrode (anode). Because the gel acts as a sieve, smaller fragments move faster and farther while larger ones lag behind near the wells.

Part (a)

(i) Identifying the alphabets.

DNA samples are loaded into wells at the cathode (negative) side and migrate toward the anode (positive) side.

  • Anode end (I): it is the end toward which the bands are moving, i.e. the end farthest from the wells. In this schematic the wells are at the top and the bands migrate downward toward the arrow at the bottom, so the anode is T (the bottom end). (The figure itself is not reproduced here, so this reads the labelled migration direction; the anode is whichever labelled end lies at the far, "+" side of the run.)
  • Lightest/smallest DNA (II): since small fragments travel farthest, the smallest/lightest DNA is the band that has migrated the greatest distance from the wells, closest to the anode (near T) — the lowest band on the gel.

(ii) Agarose gel and its use.

Agarose is a polysaccharide (natural polymer) extracted from seaweed. On cooling from a hot buffer it sets into a gel with a network of microscopic pores, i.e. it behaves as a molecular sieve. It is used in electrophoresis because:

  • its pores permit smaller DNA fragments to move through more easily and rapidly than larger fragments, so fragments are cleanly separated by size; and …

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