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Long Answer Questions · Q34

Q.Describe in detail the six major classes of enzymes recognised by the IUBMB classification system with one example of each, and explain the mechanism of enzyme action with reference to the active site and the enzyme-substrate complex.

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The IUBMB systematic scheme sorts every enzyme into six major classes by the general type of reaction it catalyses. Oxidoreductases catalyse oxidation-reduction reactions (e.g. alcohol dehydrogenase). Transferases catalyse the transfer of a functional group -- amino, phosphate or methyl -- between molecules (e.g. hexokinase, a kinase transferring a phosphate group). Hydrolases catalyse hydrolysis, breaking a bond by adding water (e.g. amylase, lipase, the various proteases). Lyases catalyse the removal of a group by a non-hydrolytic mechanism, often forming a double bond or ring (e.g. decarboxylases, aldolase). Isomerases catalyse the intramolecular rearrangement of a substrate into an isomer (e.g. phosphoglucomutase). Ligases (synthetases) catalyse the ATP-driven joining of two molecules (e.g. DNA ligase).

The mechanism by which any of these enzymes acts begins with its active site -- a specific region, formed by the enzyme's folded three-dimensional structure, where the substrate binds to form a transient enzyme-substrate (ES) complex. Two classical models describe this binding: the lock-and-key model (Fischer, 1894), which treats the active site as a rigid structure permanently and precisely complementary to the substrate's shape, and the induced-fit model (Koshland, 1958), which treats the active site as flexible, reshaping itself slightly around the substrate as it binds for a closer fit -- the model that better accounts for the small conformational changes actually observed in many enzymes. Once the ES complex has formed, the reaction proceeds through a high-energy transition state, which the enzyme stabilises -- by straining particular substrate bonds, holding reacting groups in precise orientation, bringing reactants into close proximity, or fo …

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