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Botany · Ch 3 — Chromosomal Basis of Inheritance

Types of Mutation

3.6.1

Types of Mutation

Mutations can be classified along several independent dimensions simultaneously, and a single mutation is usually described using more than one of these categories at once. By origin, a mutation is spontaneous if it arises without any identifiable mutagen, or induced if it results from deliberate or incidental exposure to a known mutagen. By the cell type affected, a mutation is somatic if it occurs in a non-reproductive cell (and so is not passed to offspring) or germ-line if it occurs in a reproductive cell (and so can be inherited). By its effect on gene function, a mutation can be loss-of-function (eliminating the gene's normal activity entirely, also called a null or knockout mutation), hypomorphic (merely reducing, or 'leaking', some of the normal activity), hypermorphic (increasing the normal activity beyond its usual level), or gain-of-function (causing the gene to be expressed at an incorrect time or in the wrong cells altogether, sometimes called ectopic expression). At the molecular level, a point mutation is either a nucleotide substitution, which is further split into a transition (a purine replaced by the other purine, A to G, or a pyrimidine replaced by the other pyrimidine, T to C) or a transversion (a purine replaced by a pyrimidine, or vice versa, such as A to T or C to G), or it is an insertion (one or more extra nucleotides added) or a deletion (one or more nucleotides lost). Finally, by its effect once the mRNA is translated, a mutation is silent (synonymous) if the new codon still specifies the identical amino acid, missense (non-synonymous) if the new codon specifies a different amino acid, nonsense if the new codon becomes on …

Table 3.8Major types of mutations
Basis of classificationTypeMajor feature
OriginSpontaneousOccurs in the absence of a known mutagen
OriginInducedOccurs in the presence of a known mutagen
Cell typeSomaticOccurs in non-reproductive cells
Cell typeGerm-lineOccurs in reproductive cells
Effect on functionLoss-of-function (knockout, null)Eliminates normal function
Effect on functionHypomorphic (leaky)Reduces normal function
Effect on functionHypermorphicIncreases normal function
Effect on functionGain-of-function (ectopic expression)Expressed at an incorrect time or in inappropriate cells
Molecular changeTransitionPurine to purine (A<->G) or pyrimidine to pyrimidine (T<->C)
Molecular changeTransversionPurine to pyrimidine (A<->T) or pyrimidine to purine (C<->G)
Molecular changeInsertionOne or more extra nucleotides are present
Molecular changeDeletionOne or more nucleotides are missing
Effect on translationSilent (synonymous)No change in the amino acid encoded
Effect on translationMissense (non-synonymous)Change in the amino acid encoded
Figure 3.19Types of point mutation

What this figure shows. Walks through a wild-type DNA/mRNA/protein sequence and six ways a single base-pair change can alter it: a transition mutation (purine-to-purine or pyrimidine-to-pyrimidine) that produces a missense codon coding for a different amino acid; a transversion; a nonsense mutation, where the new codon becomes a premature stop signal (UAA), truncating the protein; a silent mutation, where the new codon still specifies the same amino acid; and addition and deletion (frameshift) mutations, where inserting or removing a single nucleotide shifts the trip …