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Q.The substrate used during DNA replication by the enzyme DNA-dependent DNA polymerase is : (A) Deoxyribonucleotide triphosphate (B) Deoxyribonucleoside triphosphate (C) Ribonucleotide triphosphate (D) Ribonucleoside triphosphate

CBSECBSE Class XII Board 2025MCQ· 1mImportance★★★★★
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DNA polymerase adds nucleotides to a growing DNA chain by using deoxyribonucleoside triphosphates (dNTPs) as substrates, which provide both the building block and the energy for phosphodiester bond formation. The answer is (B).

Why deoxyribonucleoside triphosphates?

DNA replication requires two things: the correct chemical building blocks that match the template strand, and energy to drive the formation of new bonds. DNA polymerase accomplishes both with a single substrate molecule.

The key is understanding what "nucleoside" versus "nucleotide" means, and why the triphosphate form matters.

A nucleoside = sugar + nitrogenous base

A nucleotide = sugar + nitrogenous base + phosphate group(s)

In biochemistry textbooks, you'll often see "nucleotide" used loosely to mean any of these forms, but the precise terminology matters here. When we say deoxyribonucleoside triphosphate, we mean:

  • Deoxyribose sugar (the "deoxyribo-" part)
  • A nitrogenous base (A, T, G, or C)
  • Three phosphate groups attached to the 5′ carbon of the sugar

How DNA polymerase uses dNTPs

  1. The substrate arrives as a triphosphate

    DNA polymerase recognizes and binds deoxyribonucleoside triphosphates: dATP, dTTP, dGTP, and dCTP. The three phosphate groups are designated α, β, and γ (counting outward from the sugar).

  2. Base-pairing determines which dNTP is selected

    The enzyme checks which incoming dNTP correctly pairs with the template strand (A with T, G with C). Only the complementary dNTP is accepted.

  3. The polymerization reaction

    DNA polymerase catalyzes a nucleophilic attack by the 3′-OH group of the growing strand on the α-phosphate of the incoming dNTP. This forms a new phosphodiester bond and releases pyrophosphate (PPi, the β and γ phosphates together).

    DNAn + dNTP → DNAn+1 + PPi (pyrophosphate)

  4. Energy comes from breaking the high-energy bond

    The release of pyrophosphate (which is then hydrolyzed to two inorganic phosphates) makes the reaction thermodynamically favorable. The triphosphate form is essential because it provides the energy currency.

Watch out

Option (A) says "deoxyribonucleotide triphosphate." Technically, once the three phosphates are attached, you could call it a nucleotide — but the standard biochemical nomenclature for the substrate is nucleoside triphosphate, not nucleotide triphosphate. The IUPAC convention and all major biochemistry texts (Lehninger, Berg, Voet) use "deoxyribonucleoside triphosphate" or dNTP.

Why not the other options?

Option (C) and (D): Ribonucleotide/ribonucleoside triphosphates (rNTPs) contain ribose sugar, not deoxyribose. These are used by RNA polymerase during transcription, not by DNA polymerase during replication. DNA strands have deoxyribose; incorporating ribose would be a replication error.

Option (A): While "deoxyribonucleotide triphosphate" might seem equivalent, the accepted term in enzymology is deoxyribonucleoside triphosphate. The substrate is named as a nucleoside derivative (base + sugar) with three phosphates attached, not as a nucleotide with additional phosphates.

✓Final answer

The correct option is (B) Deoxyribonucleoside triphosphate.

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